糖心TV

Biography

I am currently an Associate Professor in Control and Engineering Biology, in the School of Engineering, University of 糖心TV, UK.

I obtained my PhD degree in Electronics & Electrical Engineering from the , , Australia, Melbourne, Australia in 2012, under the supervision of Prof. Erik Weyer, where I worked on modelling and control design of river systems (click hereLink opens in a new window for access to my PhD thesis).

Prior joining University of 糖心TV, I was an Assistant Professor in Control Engineering at the , , UK from 2018-2021, I was a Research Fellow in , School of Engineering, University of 糖心TVLink opens in a new window, UK, in the research group of Prof. Declan Bates. from 2015-2018. I was a Postdoctoral Fellow in in Pohang, South Korea from 2012-2015, in the research group of Dr. Pan-Jun Kim. I was a tutor/lecturer in the Faculty of Engineering, , Malaysia from 2002-2007.

Research Interests

My primary research interests are dynamical systems modelling and control of biological system. I have mostly studied on plant gene regulatory network and my research mainly focuses on application of engineering design principles for synthetic biology application to improve crop productivity.

News

• Feb 2026. Our recent is published in ACS Synthetic Biology. In this work, we expand the design space for constructing synthetic IFFL circuits by leveraging hybrid RNA–protein multilevel regulation. This is a joint work with Xun Tang from LSU and Jongmin Kim from POSTECH. Special shout out to the co-first authors Seongho Hong and Syeda Simra Shoaib who worked really hard on this project.
• Jan 2026: Congratulation to Tea that her paper has been accepted to 2026 Americal Control Conference. Well done!
• Jan 2026: Our recent is published in Control Engineering Practice. In this work, we introduce an open benchmark dataset based on ISO-compliant road profiles, aimed at supporting research on suspension system identification, control algorithm design and nonlinear suspension behaviour. The dataset (freely available at zenodo) includes road profiles, measured suspension responses, and modelling/visualisation code, along with a benchmark comparison of identification models. We hope that this resource is useful to the vehicle dynamics and control community. This work is in collaboration with Ai Hui Tan from Multimedia University.

Teaching

Postgraduate Level

• ES4A3 Automobile Systems, Dynamics and Control

• ES97J Computational Synthetic and Systems Biology
• ES4F0 Advanced Control Systems

Undergraduate Level

• ES3C8 Systems Modelling and Control
• ES3J1 Advanced Systems and Software Engineering

• ES2C6 Electromechanical System Design

• ES2C1 Introduction to Biomedical and Clinical Engineering

Selected Publications (latest 3 years)

Full publication list can be found here ().

• K.H. Lee, D.S. Laila, D.G. Bates, M. Foo, "A mechanistic biofilter start-up model for aquaponic systems based on ASM1-2N during
  fishless cycling (chemically biofilter activation)", in preparation.
• T.E.A. Clark, M. Foo, A.P.S. Darlington, "Leveraging cellular resource competition for minimal controller design in synthetic biology", in preparation.
• S.S. Shoaib, S. Hong, J. Kim, X. Tang, M. Foo, "Mechanistic insights into antithetic integral feedback and its design constraints", in preparation.

Published

1. S. Hong, S.S. Shoaib, M. Foo, X. Tang, J. Kim (2026), "Multi-level regulation in RNA-protein hybrid incoherent feedforward loop circuits for tunable pulse dynamics in Escherichia coli", ACS Synthetic Biology, doi: 10.1021/acssynbio.5c00111
2. T.E.A. Clark, M. Foo, A.P.S. Darlington (2026), "On the implications of finite cellular resources for engineering the dynamics of two-gene control motifs in synthetic biology" to appear in Proceeding of American Control Conference.
3. M.Foo, A.H. Tan (2026), "Benchmark vehicle suspension data based on ISO 8608 road profiles" Control Engineering Practice 169, p106755.
4. A. Hussain, E. Yeong, M. Foo (2025), "The versatility of a lab-scale aquaponic system for teaching and learning mechanical engineering education", International Journal of Mechanical Engineering Education, doi: 10.1177/03064190251356612
5. A.H. Tan, M. Foo (2025), "Kernel design for estimation of resonant systems: a case study on vehicle suspension", Mechanical Systems and Signal Processing 234, p112875.
6. M. Spurgeon, T. Clark, T.R. Spartalis, A.P.S. Darlington, X. Tang, M. Foo (2025), "Designing biological network motif-based controllers by reverse engineering Hill function-type models from linear models", Journal of the Royal Society of Interface, 22, p20240811.
7. T. Spartalis, M. Foo, X. Tang (2024), "Feed forward loop improves the transient dynamics of an antithetic biological controller", Journal of the Royal Society of Interface, 22, p20240467.
8. A.M.H. Chan, M.L. Pay, J. Christensen, F. He, L.C. Roden, H. Ahmed, M. Foo (2024), "Red, blue or mix: choice of optimal light qualities for enhanced plant growth and development through in silico analysis" in Silico Plants, 6, diae008.
9. J. Tan, M. Foo (2024), "An extended design framework of antithetic integral feedback controller for restoring disrupted circadian gene profiles" Proceedings of Irish Signal and Systems Conference, 13-14 June, Belfast, UK, pp. 1-6.
10. C. McGirk, H Ahmed, D.S. Laila, A. Pike, M. Foo, R. Osborne, Q. Lu (2024), "Practical guide for noise characterisation of back pressure sensors: towards digital twin for an industrial high horse power engine test cell" IEEE Sensors Letter, 8, pp.1-4.
11. M.L. Pay, J. Christensen, F. He, L. Roden, M. Rasel, L. Tyler, H. Ahmed, M. Foo (2024), "A review of LED driver topologies and control methods for energy efficient smart farming application", In: Peng, Z. (eds) Trends and Technological Challenges in Green Energy. Green Energy and Technology. Springer.

Projects (on-going)

• Control theoretic framework for gene expression network.

  • Collaborators: Tea Clark (PhD Student, 糖心TV), Dr. Alexander Darlington (糖心TV).

• Design and evaluation of synthetic RNA-based Incoherent Feed-forward Loop circuit

  • Collaborators: Prof. Jongmin Kim (POSTECH), Seongho Hong (POSTECH), Prof. Xun Tang (LSU), Syead Shoaib (LSU).

Grants

• 拢15,5k, Ministry of Higher Education Malaysia, Fundamental Research Grant Scheme (FRGS), [Co-I] "Improving consistency in state-of-health estimation of Lithium-Ion batteries for electric vehicle" (with Dr. Ai Hui Tan (PI), Prof. Duu Sheng Ong and Dr. Chin Leei Cham, Multimedia University), 2024 to 2026.
• 拢5.9k, Gulf University of Science Technology Seed Grant, [Co-I] "AI-Driven IoT monitoring system for combating obesity" (with Dr. Babul Ibrahim (PI), GUST, Dr. Abedalmuhdi Almoman, GUST, Dr. Muhammed Sutcu, GUST, Dr. Maram Khatib, Coventry Uni, Dr. Hisyam A. Rahman, UTHO) 2024 to 2025.
• 拢300k, Korea-UK Biohealth International Collaborative Research Grant, [Co-I] "Controlling pathogenic bacteria with engineered minicells carrying the toxin secretion system" (with Prof. Jinki Yeom (PI), SNU, Prof. Juhyun Kim, KNU, Prof. Jongmin Kim, POSTECH and Dr. Alexander Darlington, University of 糖心TV), 2024 to 2026.

• 拢10k, British Council UK-Brunei Higher Education Teaching and Learning Partnership Grant, [PI] "Development of shared virtual teaching and learning tools for improved quality hands-on education in system engineering" (with Dr. Dina Shona Laila, Universiti Teknologi Brunei, Prof. Peter Mitchell, University of Bradford), 2022-2023.

• 拢14.5k, Ministry of Higher Education Malaysia, Fundamental Research Grant Scheme (FRGS), [Co-I] "Real-time input design method with machine learning for cyber-physical system identification" (with Dr. Ai Hui Tan (PI), Prof. Duu Sheng Ong and Dr. Chin Leei Cham, Multimedia University), 2021-2023.

• 拢1.05M, MRC Future Leaders Fellowship, [Co-I] "Developing a synthetic signalling system capable of the precise spatial and temporal control of protein function in living cells" (with Dr. Byron Carpenter (PI), SLS, University of 糖心TV), 2020-2022.

• 拢9.7k, MRC-KHIDI UK Korea Partnering Award [PI], "A framework for robust design of ribocomputing systems in probiotic strains for treating gastrointestinal disease" (with Dr. Jongmin Kim, POSTECH), 2019-2022.

• 拢12.2k, Royal Society Research Grant [PI], "Designing optimal light regulation of plant circadian systems for better crop productivity", 2018-2019.

• 拢27.3k, Ministry of Science and Technology Innovation of Malaysia, Science Fund [Co-I], "Multivariable identification for thermal systems" (with Dr. Ai Hui Tan (PI), Dr. Timothy Yap, Dr. Wee Ong Siew and Dr. Wooi Haw Tan, Multimedia University), 2005-2007.

• 拢29.3k, Ministry of Science and Technology Innovation of Malaysia, IRPA Fund [Co-I], "Identification of direction-dependent process" (with Dr. Ai Hui Tan (PI), Dr. Timothy Yap, Dr. Wee Ong Siew and Dr. Wooi Haw Tan, Multimedia University), 2002-2005.

Student Supervision

Current

• Tea Clark, PhD at University of 糖心TV (2024-present)

• Colin McGurk, PhD at Coventry University (2020-present)

Alumni

• Miao Lin Pay, PhD, Coventry University
• Ikenna Enebuse, PhD, Coventry University

• Nuno Paulino, PhD, University of 糖心TV

• Aleksandra Oswiecinska, PhD, Coventry University

• Iulia Gherman, PhD, University of 糖心TV

• Rucha Sawlekar, PhD, University of 糖心TV

• Seunghyeon Kim, PhD, POSTECH