Publications

Recent publications Web of Science h-index: 13

Lucas ES, Dyer NP, Murakami K, Lee YH, Chan YW, Grimaldi G, Muter J, Brighton PJ, Moore JD, Patel G, Chan JK, Takeda S, Lam EW, Quenby S, Ott S, Brosens JJ. (2015) Loss of Endometrial Plasticity in Recurrent Pregnancy Loss. Stem Cells.
Eduati F, Mangravite LM, Wang T, Tang H, Bare JC, Huang R, Norman T, Kellen M, Menden MP, Yang J, Zhan X, Zhong R, Xiao G, Xia M, Abdo N, Kosyk O, NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration. (2015) Prediction of human population responses to toxic compounds by a collaborative competition. .
Walley PW, Moore JD. (2015) Biotechnology and Genomics: Exploiting the Potential of Crop Wild Relatives. In: Redden R, Yadav SS, Maxted N, Dulloo ME, Guarino L, Smith P. (eds.) Crop Wild Relatives and Climate Change, Wiley. Pp. 212-223.
Adaikalakoteswari A, Finer S, Voyias PD, McCarthy CM, Vatish M, Moore J, Smart-Halajko M, Bawazeer N, Al-Daghri NM, McTernan PG, Kumar S, Hitman GA, Saravanan P, Tripathi G. (2015) Vitamin B12 insufficiency induces cholesterol biosynthesis by limiting s-adenosylmethionine and modulating the methylation of SREBF1 and LDLR genes. .
Muter J, Lucas ES, Chan Y-W, Brighton PJ, Moore JD, Lacey L, Quenby S, Lam EW-F, Brosens JJ. (2015) The clock protein period 2 synchronizes mitotic expansion and decidual transformation of human endometrial stromal cells. .
Ingham VA, Jones CM, Pignatelli P, Balabanidou V, Vontas J, Wagstaff SC, Moore JD, Ranson H. (2014) Dissecting the organ specificity of insecticide resistance candidate genes in Anopheles gambiae: known and novel candidate genes. .
Murakami K, Lee YH, Lucas ES, Chan Y-W, Durairaj RP, Takeda S, Moore JD, Tan BK, Quenby S, Chan JKY, Gargett CE, Brosens JJ. (2014) Decidualization induces a secretome switch in perivascular niche cells of the human endometrium. .
Wood GR, Ryabov EV, Fannon JM, Moore JD, Evans DJ, Burroughs N. (2014) MosaicSolver: a tool for determining recombinants of viral genomes from pileup data. .
Ryabov EV, Wood GR, Fannon JM, Moore JD, Bull JC, Chandler D, Mead A, Burroughs N and Evans DJ. (2014) A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) prevails after Varroa destructor-mediated, or In Vitro, transmission. .
Parkin IAP, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires CJ, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B and Sharpe AG. (2014) Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. .
Bari MF, Brown H, Nicholson AG, Kerr KM, Gosney JR, Wallace WA, Soomro I, Muller S, Peat D, Moore JD, Ward LA, Freidin MB, Lim E, Vatish M, Snead DR. (2014) BAI3, CDX2 and VIL1: a panel of three antibodies to distinguish small cell from large cell neuroendocrine lung carcinomas. . doi: 10.1111/his.12278. Epub 2013 Nov 25.
Brosens JJ, Salker MS, Teklenburg G, Nautiyal J, Salter S, Lucas ES, Steel JH, Christian M, Chan YW, Boomsma CM, Moore JD, Hartshorne GM, Sućurović S, Mulac-Jericevic B, Heijnen CJ, Quenby S, Groot Koerkamp MJ, Holstege FC, Shmygol A, Macklon NS. (2014) Uterine selection of human embryos at implantation. doi: 10.1038/srep03894.
Chan Y.-W., van den Berg H.A., Moore J.D., Quenby S., Blanks A.M. (2014) Assessment of Myometrial Transcriptome Changes Associated with Spontaneous Human Labour by High Throughput RNA-seq. [Epub ahead of print].
Nellist, C.F., Qian, W., Jenner, C.E., Moore, J.D., Zhang, S., Wang, X., Briggs, W.H., Barker, G.C., Sun, R. and Walsh, J.A. (2014) Multiple copies of eukaryotic translation initiation factors in Brassica rapa facilitate redundancy, enabling diversification through variation in splicing and broad-spectrum virus resistance. .
Leonelli, S., Smirnoff, N., Moore, J., Cook, C. and Bastow, R. (2013) Making open data work for plant scientists. .
Brown, P., Baxter, L., Hickman, R., Beynon, J., Moore, J.D. and Ott, S. (2013) MEME-LaB: motif analysis in clusters. .
Hickman, R., Hill, C., Penfold, C.A., Breeze, E., Bowden, L., Moore, J.D., Zhang, P., Jackson, A., Cooke, E., Bewicke-Copley, F., Mead, A., Beynon, J., Wild, D.L., Denby, K.J., Ott, S. and Buchanan-Wollaston, V. (2013). A Local Regulatory Network Around Three NAC Transcription Factors in Stress Responses and Senescence in Arabidopsis leaves. .
Traka, M. H., Saha, S., Huseby, S., Kopriva, S., Walley, P. G., Barker, G., Moore, J., Mero, G., van den Bosch, F., Constant, H., Kelly, L., Schepers, H., Boddupalli, S., and Mithen, R. F. (2013). Genetic regulation of glucoraphanin accumulation in Beneforté® broccoli. .
Baxter, L., Jironkin, A., Hickman, R., Moore, J., Barrington, C., Krusche, P., Dyer, N.P., Buchanan-Wollaston, V., Tiskin, A., Beynon, J., Denby, K. and Ott, S. (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. .
Kitchen, J.L., Moore, J.D., Palmer, S.A. and Allaby, R.G. (2012) MCMC-ODPR: Primer design optimization using Markov Chain Monte Carlo sampling.
Windram, O., Madhou, P., McHattie, S., Hill, C., Hickman, R., Cooke, E., Jenkins, D.J., Penfold, C.A., Baxter, L., Breeze, E., Kiddle, S.J., Rhodes, J., Atwell, S., Klieberstein, D.J., Kim Y-S., Stegle, O., Borgwardt, K., Zhang, C., Tabrett, A., Legaie, R., Moore, J., Finkenstadt, B., Wild, D.L., Mead, A., Rand, D., Beynon, J., Ott, S, Buchanan-Wollaston, V. and Denby, K. (2012) Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
Palmer, S.A., Clapham, A.J., Rose, P., Freitas, F.O., Owen, B.D., Beresford-Jones, D., Moore, J.D., Kitchen, J.L. and Allaby, R.G. (2012) Archaeogenomic evidence of punctuated genome evolution in Gossypium. . [citations 6]
Thomas, L., Hodgson, D.A., Wentzel, A., Nieselt, K., Ellingsen, T.E., Moore. J., Morrissey, E.R., Legaie, R; The STREAM Consortium, Wohleben, W., Rodriguez-Garcia, A., Martin, J.F., Burroughs, N.J., Wellington, E.M., Smith, M.C. (2012) Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture, . [citations 5]
Mukhtar, M.S., Carvunis, A-R., Dreze, M., Epple, P., Steinbrenner, J., Moore, J., Tasan, M., Galli, M., Hao, T., Nishimura, M.T., Pevzner, S.J., Donovan, S.E., Ghamsari, L., Santhanam, B., Romero, V., Poulin, M.M., Gebreab, F., Gutierrez, B.J., Tam, S., Monachello, D., Boxem, M., Harbort, C.J., McDonald, N., Gai, L., Chen, H., He, Y., European Union Effectoromics Consortium, Vandenhaute, J., Roth, F.P., Hill, D.E., Ecker, J.R., Vidal, M., Beynon, J., Braun, P., Dangl, J.L. (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. . [citations 66]
Arabidopsis Interactome Mapping Consortium (2011) Evidence for network evolution in an Arabidopsis interactome map. . [citations 82]
Breeze, E., Harrison, E., McHattie, S., Hughes, L., Hickman, R., Hill, C., Kiddle, S., Kim, Y-S., Penfold, C.A., Jenkins, D., Zhang, C., Morris, K., Jenner, C., Jackson, S., Thomas, B., Tabrett, A., Legaie, R., Moore, J.D., Wild, D.L., Ott, S., Rand, D., Beynon, J., Denby, K., Mead, A. and Buchanan-Wollaston, V. (2011) High-Resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. . [citations 43]
Moore, J., Jironkin, A., Chandler, D., Burroughs, N., Evans, D.J. and Ryabov, E.V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. . [citations 16]
Hassani-Pak, K., Legaie, R., Canevet, C., van den Berg, H.A., Moore, J.D. and Rawlings, C. (2010) Enhancing data integration with text analysis to find proteins implicated in plant stress response. . [citations 2]
Alam, M.T., Merlo, M.E., The STREAM Consortium, Hodgson, D.A., Wellington, E.M.H., Takano, E., Breitling, R. (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor . [citations 8]
Nieselt, K., Battke, F., Herbig, A., Bruheim, P., Wentzel, A., Jakobsen, O.M., Sletta, H., Alam, M.T., Merlo, M.E., Moore, J., Omara,W., Morrissey, E.R., Juarez-Hermosillo, M., Rodríguez-García, A., Nentwich, M., Thomas, L., Legaie, R., Gaze, W.H., Challis, G.L., Jansen, R.C., Dijkhuizen, L., Rand, D.A., Wild, D.L., Bonin, M., Reuther, J., Wohlleben, W., Smith, M.C.M., Burroughs, N.J., Martín, J.F., Hodgson, D.A., Takano, E., Breitling, R., Ellingsen, T.E., Elizabeth M. H. Wellington, E.M.H. (2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. . Highly Accessed. [citations 48]
Palmer, S.A., Moore, J.D., Clapham, A.J., Rose, P. and Allaby, R.G. (2009) Archaeogenetic Evidence of Ancient Nubian Barley Evolution from Six to Two-Row Indicates Local Adaptation. . [citations 10]
Alix, K., Joets, J., Ryder, C.D., Moore, J., Barker, G.C., Bailey, J.P., King, G.J. and Heslop-Harrison, J.S. (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. . [citations 31]
Moore, J.D., Kell, S.P., Iriondo J, Ford-Lloyd, B. and Maxted, N. (2008) CWRML: representing crop wild relative conservation and use data in XML. . [citations 7]
Moore, J.D. and Allaby, R.G. (2008) TreeMos: a high-throughput phylogenomic approach to find and visualise phylogenetic mosaicism. .
Kell, S.P., Moore, J.D., Iriondo, J.M., Scholten, M.A., Ford-Lloyd, B.V. and Maxted, N. (2008) CWRIS: an information management system to aid crop wild relative conservation and sustainable use. In: Maxted, N., Ford-Lloyd, B.V., Kell, S.P., Iriondo, J., Dulloo, E. and Turok, J. (eds.) Crop Wild Relative Conservation and Use. CABI Publishing, Wallingford. Pp. 469-489. [citations 6]
Alix, K., Ryder, C.D., Moore, J., King, G.J., and Heslop-Harrison, P.J.S. (2005). The Genomic Organization of Retrotransposons in Brassica oleracea. . [citations 19]
Kell, S.P., and Moore, J. (2005). The PGR Forum crop wild relative information system (CWRIS): an introduction. .
Moore, J.D. and Kell, S.P. (eds.) (2005). PGR Forum CD ROM. University of Birmingham, UK.

Conference presentations

Ryabov, E.V., Wood, G.R., Fannon, J.M., Moore, J.D., Bull, J.C., Chandler, D., Mead, A., Burroughs, N. and Evans, D.J. (2013). Effect of pathogenic strains of Deformed wing virus and the mite Varroa destructor on global gene expression in the honeybee (Apis mellifera). Oral presentation. EMBO-ESF Research Conferences Integrated Insect Immunology: From Basic Biology To Environmental Applications 23-28 September 2013 Polonia Castle in Pultusk, Poland.
Moore, J.D. (2013). RNA-Seq analysis of diverse vegetable Brassicas and wild relatives. Oral presentation. UK Genome Science 2013. Nottingham, UK.
Moore, J.D. (2013). Brassica C genome transcript diversity. Oral presentation. UK Brassica Research Community 2013. Rothamsted, UK.
Isom, G., Poon, V., Corre, C., Hodgson, D.A. and Moore, J.D. (2013). ScoCyc: a curated genome-scale model of Streptomyces coelicolor A3(2) metabolism. Poster presentation. Chemistry and Biology of Natural Products 2013. 糖心TV, UK.
Moore, J.D., Walley, P.G., Edger, P., Arias, T., Mayfield, D.R.F., Teakle, G.R., Allaby, R.G., Pires, J.C. and Barker, G. (2013). Insights Into Evolutionary Relationships Among Brassica C Genome Wild Species and Crops. Oral presentation. Plant and Animal Genome XXI. San Diego, USA.
Moore, J.D. (2012). From bench to web via spreadsheets: practical data sharing in research groups. Invited oral presentation. Making data accessible to all conference, Exeter, UK.
Bari, M. F.; Nicholson, A. G.; Kerr, K. M.; et al. (2012). Biomarkers for the classification of highly malignant neuroendocrine lung carcinoma. Histopathology 61: 202.
Boddington, C., Jenkins, D. and Moore, J.D. (2012) The Arabidopsis IDEAs database: integrating and visualising Interactions, Domains, Experiments and Annotations. Oral and poster presentations. UK Plant Systems Biology 2012, Norwich, UK.
Teakle, G., Walley, P., Moore, J., Astley, D., King, G., Buchanan-Wollaston, V., Hand, P., Pink, D. and Barker, G. (2012). Genetic diversity in C genome diploid Brassicas. Poster presentation. Plant and Animal Genome XX.
Adaikalakoteswari, A., Moore, J., McTernan, P.G., Kumar, S., Saravanan, P., Tripathi, G. (2011). Low B12 and high folate: a novel regulator of cholesterol biosynthesis in human adipocytes. Poster presentation. European Association for the Study of Diabetes 2011, Lisbon, Portugal.
Moore, J. (2011). Palaeointeractomics. Poster presentation. An inter-disciplinary forum on the subject of 'Time', University of 糖心TV, UK.
Hill, C., Jenkins, D., Moore, J.D. and Penfold, C. (2011). Transcriptional networks in plant stress responses. Oral presentation. UK Plant Systems Biology Workshop 2011, CSBE Edinburgh, UK.
Bari, M.F., Moore, J., Zehnder, D., Bird, H., and Snead, D. (2010). Analysis of gene expression array data to identify biomarkers specific to small cell lung cancer. Poster Presentation. AACR-IASLC Joint Conference on Molecular Origins of Lung Cancer 2010, Coronado, USA.
Bari, M.F., Moore, J., Zehnder, D., Bird, H., and Snead, D. (2010). Molecular Characteristics of Small Cell Lung Carcinoma. Pathological Society of Great Britain and Ireland Winter Meeting, London, UK.
Moore, J.D. and Allaby R.G. (2008). TreeMos: a high-throughput phylogenomic approach to identifying and visualising phylogenetic mosaicism. Poster Presentation. Genetics 2008, Berlin, Germany.
Alix, K., Ryder, C.D., Moore, J., King, G.J. and Heslop-Harrison, P.J.S. (2006). . Poster presentation. In: Plant and Animal Genome XIV Conference Abstracts.
Moore, J.D., King, G.J., Lynn, J. (2006). . Oral presentation. 2006 UK Brassica Research Community Annual Meeting, John Innes Centre, UK.
Barker, G., Ryder, C., Moore, J., Weaver, G., Naylor, R., Edwards, R., Sharpe, A., Durkin, J., Lydiate, D., and King, G. (2005). . Poster presentation. In: Plant and Animal Genome XIII Conference Abstracts.
Kell, S.P., Moore, J., Iriondo, J.M., Scholten, M.A. and Maxted, N. (2005). . Oral presentation. In: First International Conference on Crop Wild Relative Conservation and Use: Book of abstracts (Kell, S., Scholten, M. eds.).
Barker, G., Ryder, C., Moore, J., Naylor, R., Edwards, R., Sharpe, A., Durkin, J., Lydiate, D., and King, G. (2004). A public EST sequencing programme for Brassica oleracea. Poster presentation. Brassica 2004, Daejeon, Korea.

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