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DTSTART:19960101T000000 END:STANDARD BEGIN:STANDARD TZNAME:GMT TZOFFSETFROM:+0100 TZOFFSETTO:+0000 DTSTART:19961027T020000 RRULE:FREQ=YEARLY;BYMONTH=10;BYDAY=-1SU END:STANDARD END:VTIMEZONE BEGIN:VEVENT DTSTAMP:20260610T220210Z DTSTART;VALUE=DATE-TIME:20190122T120000 DTEND;VALUE=DATE-TIME:20190122T130000 SUMMARY:WMS/SLS Micro Seminar: Around the world and in the stomach with H elicobacter pylori\, Department of Microbiology\, Tumor and Cell Biology (MTC)\, Karolinska Institutet TZID:Europe/London UID:20190122-8a17841b6850d72e016855eb0d694df0@warwick.ac.uk CREATED:20190116T090831Z DESCRIPTION:Abstract: As Helicobacter pylori displays an extensive intra- species diversity\, genomics is a powerful tool to understand evolution and mechanisms of virulence. Generating large amounts of whole-genome se quencing (WGS) data is however not sufficient\, but to produce genomes o f high quality with careful annotation and detailed metadata is also cru cial to be able to draw biologically and clinically relevant conclusions . To facilitate this we collected all publically available H. pylori WGS data together with available metadata in a BIGS database. In addition t o this\, we performed a focused sequencing effort\, generating in total 450 new draft genomes from different parts of the world\, with an emphas is on Europe and the Americas. The resulting database\, consisting of ov er 1500 genomes has allowed us to dig deeply into several interesting as pects of H. pylori biology and evolution\, including an expansion of our previous comparative genomics efforts of H. pylori isolates from the Am erican continent\, ranging from Northern Canada to Chile in the South\, and what implications the mixing of ancestries from European\, African\, Asian and Old World Amerind sources may have on regional virulence patt erns. In addition to studying the genomic aspects of H. pylori we are al so interested in more functional aspects of the host-microbe interaction in the human stomach. To study this\, we performed RNA sequencing of st omach biopsies from individuals with various gastric disease\, ranging f rom non-atrophic gastritis to the precancerous lesions corpus atrophy an d intestinal metaplasia. This way\, we could both investigate the compos ition of the transcriptionally active microbial community and the H. pyl ori gene expression. Short Biography: I have a background in Biomedical Sciences from Lund University\, Sweden and defended my PhD entitled “Mul ti-level characterization of host and pathogen in Helicobacter pylori-as sociated gastric carcinogenesis” at University of Gothenburg/Chalmers Un iversity of Technology in 2014. After three years as a Postdoctoral rese archer in the lab of Lars Engstrand at Science for Life. Laboratory/Karo linska Institutet\, Stockholm\, I have now returned to Gothenburg to pur sue my own projects. In my career I have gradually moved from being a ma inly experimental researcher with the focus on the human side of cancer development\, to bioinformatics and analyses of bacterial genomics\, wit h an emphasis on Helicobacter pylori. LOCATION:MBU (A151)\, Medical School Building\, Gibbet Hill Campus\, Univ ersity of TV CATEGORIES:BiomedicalSciences,BMS_MI,Joint WMS/SLS Micro LAST-MODIFIED:20190116T090831Z ORGANIZER;CN=Jas Bains: END:VEVENT END:VCALENDAR