# Version 2 following feedback from NDMH

# I need emacs before I can function effectively as a human being
# Other people need vim
sudo apt-get install -y emacs vim vim-gtk3

# I don't like GNOME (selected lightdm as login managed when prompted)
apt install ubuntu-mate-desktop

(Might want to log out and back in again at this point)

# New(ish) fortran compiler. At time of writing this installed
# gcc 7.4 which is a similar version to the latest on the SCRTP
# desktops.
sudo apt-get install -y gfortran

# Python things people expect and installed via package manager
# (Mainly chosen for the dependencies they pull in, including git)
sudo apt-get install -y python3-tk python3-opengl ipython3 spyder3
sudo apt-get install -y python3-sympy

# Jupyter notebooks for those who live inside a browser, and Qt console
# for those that don't.
sudo apt-get install -y jupyter python3-notebook python3-qtconsole

# Maths libraries
sudo apt-get install -y fftw-dev fftw3-dev liblapack-dev libblas-dev
sudo apt-get install -y python3-numba

# MPI dev package
sudo apt install -y libopenmpi-dev

# basic git and mercurial captured above but still need
sudo apt-get install -y cvs git-all

# Plotting/visualisation and modelling
sudo apt-get install -y gnuplot grace vtk7 jmol blender

# Python plotting and such
sudo apt-get install -y python3-pygraphviz python3-matplotlib
sudo apt-get install -y python3-seaborn

# The cool kids code in Atom and VSCode these days
wget -qO - https://packagecloud.io/AtomEditor/atom/gpgkey | sudo apt-key add
sudo sh -c 'echo "deb [arch=amd64] https://packagecloud.io/AtomEditor/atom/any/ any main" > /etc/apt/sources.list.d/atom.list'
sudo apt-get update

wget https://az764295.vo.msecnd.net/stable/83bd43bc519d15e50c4272c6cf5c1479df196a4d/code_1.60.1-1631294805_amd64.deb
sudo apt install -y ./code_1.60.1-1631294805_amd64.deb
rm ./code_1.60.1-1631294805_amd64.deb

# IO stuff
sudo apt install -y python3-h5netcdf python3-netcdf4 libnetcdff

# LaTeX editing
sudo apt-get install -y lyx
sudo apt-get install -y texmaker texstudio

# You never know when you'll need ghostscript
sudo apt-get install -y ghostscript

# Build tools which might be needed to compile other software later
sudo apt-get install -y cmake make autoconf pkg-config

# Groupware and such
wget https://downloads.slack-edge.com/linux_releases/slack-desktop-4.19.2-amd64.deb
sudo apt install -y ./slack-desktop-4.19.2-amd64.deb
rm slack-desktop-4.19.2-amd64.deb
wget https://go.skype.com/skypeforlinux-64.deb
sudo apt install -y ./skypeforlinux-64.deb
rm skypeforlinux-64.deb
sudo apt install -y evolution 
 
# Might be useful to play with
sudo apt install -y python3-sklearn python3-skimage

# Code IDEs
sudo apt install -y codeblocks idle3

# Things available via pip which aren't in the ubuntu package repo but
# which we might want to install globally on each laptop
sudo apt-get install -y python3-pip

sudo pip3 install ase nbgrader rise

# Download Microsoft Teams
wget https://packages.microsoft.com/repos/ms-teams/pool/main/t/teams/teams_1.4.00.13653_amd64.deb
sudo apt install -y ./teams_1.4.00.13653_amd64.deb
rm teams_1.4.00.13653_amd64.deb