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Publications

2025

Corbella, A; Mckinley, TJ; Birrel, PJ; De Angelis, D; Presanis, AM; Roberts, GO; Spencer, SEF (2025) FOUNDATIONS OF DATA SCIENCE 7 1062-1088

Rawlings, NN; Bailey, M; Courtenay, O (2025) PLOS NEGLECTED TROPICAL DISEASES 19 e0012680

Roberts, I; Everitt, RG; Koskela, J; Didelot, X (2025) PLOS COMPUTATIONAL BIOLOGY 21 e1012995

Looker, J; Rock, KS; Dyson, L (2025) PLOS COMPUTATIONAL BIOLOGY 21 e1013524

Eigentler, L; Reinhold, K (2025) JOURNAL OF EVOLUTIONARY BIOLOGY 38 1322-1334

Vincent, EMR; Hill, EM; Parnell, S (2025) PLOS COMPUTATIONAL BIOLOGY 21 e1013352

Craddock, H; Spencer, SEF; Didelot, X (2025) INFECTIOUS DISEASE MODELLING 10 1418-1432

Kaye, AR; Guzzetta, G; Tildesley, MJ; Thompson, RN (2025) PLOS COMPUTATIONAL BIOLOGY 21 e1012364

Aschauer, N; Parnell, S (2025) AGRICULTURAL SYSTEMS 226 104303

Guyver-Fletcher, G; Gorsich, EE; Jewell, C; Tildesley, MJ (2025) INFECTIOUS DISEASE MODELLING 10 702-715

Bacon, J; Brooks, S; Burroughs, NJ; McAinsh, AD; Bretschneider, T (2025) 2025 IEEE 22ND INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI 1571091434

Tennant, WSD; Cardinale, E; Moutroifi, Y; Spencer, SEF; Charafouddine, O; Tildesley, MJ; Métras, R (2025) PLOS NEGLECTED TROPICAL DISEASES 19 e0013346

Hill, EM; Prosser, NS; Brown, PE; Ferguson, E; Green, MJ; Kaler, J; Keeling, MJ; Tildesley, MJ (2025) PREVENTIVE VETERINARY MEDICINE 236 106408

Doyle, NJ; Bonnet, G; Keeling, MJ; Tildesley, MJ; Edmunds, WJ (2025) PREVENTIVE VETERINARY MEDICINE 245 106694

Booth, DJ; Montenegro-Johnson, TD (2025) PHYSICAL REVIEW FLUIDS 10 94203

Gowers, RP; Richardson, MJE (2025) PHYSICAL REVIEW E 111 54406

Carson, J; Keeling, M; Ribeca, P; Didelot, X (2025) MOLECULAR BIOLOGY AND EVOLUTION 42 msaf083

Seibel, RL; Tildesley, MJ; Hill, EM (2025) ROYAL SOCIETY OPEN SCIENCE 12 241964

Webber, JJ; Montenegro-Johnson, TD (2025) PHYSICAL REVIEW RESEARCH 7 L032055

Helekal, D; Koskela, J; Didelot, X (2025) SYSTEMATIC BIOLOGY

Webber, JJ; Montenegro-Johnson, TD (2025) JOURNAL OF FLUID MECHANICS 1009 A38

Webber, JJ; Montenegro-Johnson, TD (2025) PHYSICAL REVIEW FLUIDS 10 100501

Keeling, MJ; Hill, EM; Petrou, S; Tran, PB; Png, ME; Staniszewska, S; Clark, C; Hassel, K; Stowe, J; Andrews, N (2025) VACCINE 53 126948

Koki, C; Shields, R; Sweetman, R; Boyle, J; Khan, O; Keung, SNLC; Arvanitis, TN; Devall, AJ; Burroughs, NJ; Quenby, S (2025) LANCET REGIONAL HEALTH-EUROPE 55 101343

Didelot, X; Helekal, D; Roberts, I (2025) JOURNAL OF THEORETICAL BIOLOGY 607 112109

Inman, A; Spiritosanto, E; Evans, BL; Lutton, JE; Tada, M; Bretschneider, T; Haas, PA; Smutny, M (2025) NATURE COMMUNICATIONS 16 6187

Higgins, D; Looker, J; Sunnucks, R; Carruthers, J; Finnie, T; Keeling, MJ; Hill, EM (2025) JOURNAL OF THE ROYAL SOCIETY INTERFACE 22 20240910

Prosser, NS; Ferguson, E; Kaler, J; Hill, EM; Tildesley, MJ; Keeling, MJ; Green, MJ (2025) VETERINARY RECORD

Rand, DA; Sáez, M (2025) NONLINEARITY 38 45015

Tzamarias, BDE; Ballesta, A; Burroughs, NJ (2025) MATHEMATICS 13 3080

Ott, S; Ioannidou, Z; Jacquens, A; Schang, AL; Duchateau, A; Pardessus, P; Mezger, V; Gressens, P; Sabéran-Djoneidi, D (2025) EUROPEAN NEUROPSYCHOPHARMACOLOGY 99 234-234

Didelot, X; Ribeca, P (2025) GENOME BIOLOGY 26 170

Koh, JMJ; Cunniffe, NJ; Parnell, S (2025) SCIENTIFIC REPORTS 15 5610

Curran-Sebastian, J; Dyson, L; Hill, EM; Hall, I; Pellis, L; House, T (2025) JOURNAL OF THEORETICAL BIOLOGY 608 112135

Ogi-Gittins, I; Steyn, N; Polonsky, J; Hart, WS; Keita, M; Ahuka-Mundeke, S; Hill, EM; Thompson, RN (2025) PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES 383 20240412

Yang, ZY; Davies, H; Clapham, J; Lopez, L; Bratcher, HB; Tiong, A; Didelot, X; Maiden, MCJ; Carter, PE; Ren, XY (2025) INFECTION GENETICS AND EVOLUTION 129 105726

Althobaity, YM; Tildesley, MJ (2025) SCIENTIFIC REPORTS 15 15748

Prosser, NS; Hill, EM; Gow, L; Cavallaro, M; Tildesley, MJ; Keeling, MJ; Kaler, J; Ferguson, E; Green, MJ (2025) VETERINARY RECORD 197

Ellis, J; Lázaro, E; Duarte, B; Magalhaes, T; Duarte, A; Benhadi-Marín, J; Pereira, JA; Vicent, A; Parnell, S; Cunniffe, NJ (2025) PLANTS PEOPLE PLANET

Ellis, J; Lázaro, E; Duarte, B; Magalhaes, T; Duarte, A; Benhadi-Marín, J; Pereira, JA; Vicent, A; Parnell, S; Cunniffe, NJ (2025) PLANTS PEOPLE PLANET 7 1403-1423

Bierkens, J; Kamatani, K; Roberts, GO (2025) BERNOULLI 31 2323-2350

Hart, WS; Hurrell, JW; Kaye, AR; Chand, M; Keeling, MJ; Thompson, RN (2025) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 122 e2507311122

Muter, J et al. (2025) SCIENCE ADVANCES 11 eadv1988

Fairbanks, EL; Whitlock, FM; Baylis, M; Tildesley, MJ; Daly, JM (2025) EQUINE VETERINARY JOURNAL

Medina-Aguayo, FJ; Everitt, RG (2025) STATISTICS AND COMPUTING 35 121

Rehman, SSU; Nasar, MI; Mesquita, CS; Al Khodor, S; Notebaart, RA; Ott, S; Mundra, S; Arasardanam, RP; Muhammad, K; Alam, MT (2025) BRIEFINGS IN BIOINFORMATICS 26 bbaf323

Ogi-Gittins, I; Polonsky, J; Keita, M; Ahuka-Mundeke, S; Hart, WS; Plank, MJ; Lambert, B; Hill, EM; Thompson, RN (2025) INFECTIOUS DISEASE MODELLING 10 935-945

Wu, XC; Moro, S; Marks, A; Alsufyani, M; Yu, ZD; Perdigao, LMA; Chen, XX; Luci, AMT; Crockford, C; Spencer, SEF; Fox, DJ; Pei, J; McCulloch, I; Costantini, G (2025) NATURE COMMUNICATIONS 16 7031

Hart, WS; Amin, J; Park, H; Kitagawa, K; Jeong, YD; Kaye, AR; Iwami, S; Thompson, RN (2025) NATURE COMMUNICATIONS 16 8471

Cecchi, G; Ngari, N; Paone, M; de Gier, J; Onyango, S; Barreaux, A; Thevenon, S; Solano, P; Kaye, A; Tennant, W; Tildesley, MJ; Halos, L (2025) TRENDS IN PARASITOLOGY 41 734-745

Chávez, VA; Brown, N; van den Bosch, F; Parnell, S; Dyke, A; Hall, C; Karlsdottir, B; Marzano, M; Morris, J; O'Brien, L; Williams, D; Milne, AE (2025) JOURNAL OF APPLIED ECOLOGY 62 857-871

Mitja, O et al. (2025) PLOS NEGLECTED TROPICAL DISEASES 19 e0012899

Jeong, YD; Ejima, K; Kim, KS; Iwanami, S; Hart, WS; Thompson, RN; Jung, IH; Iwami, S; Ajelli, M; Aihara, K (2025) COMMUNICATIONS MEDICINE 5 2

Mikaberidze, A et al. (2025) PHYTOPATHOLOGY 115 1260-1285

2024

Davis, CN; Crump, RE; Sutherland, SA; Spencer, SEF; Corbella, A; Chansy, S; Lebuki, J; Miaka, EM; Rock, KS (2024) PLOS COMPUTATIONAL BIOLOGY 20

Corbella, A; Mckinley, TJ; Birrel, PJ; De Angelis, D; Presanis, AM; Roberts, GO; Spencer, SEF (2024) FOUNDATIONS OF DATA SCIENCE

Crump, RE; Aliee, M; Sutherland, SA; Huang, C; Crowley, EH; Spencer, SEF; Keeling, MJ; Shampa, C; Miaka, EM; Rock, KS (2024) PARASITES & VECTORS 17

Richardson, MJE (2024) PHYSICAL REVIEW E 109

Asplin, P; Keeling, MJ; Mancy, R; Hill, EM (2024) PLOS COMPUTATIONAL BIOLOGY 20

Cant, S; Shanks, GD; Keeling, MJ; Penman, BS (2024) EPIDEMIOLOGY & INFECTION 152

Davis, EL; Hollingsworth, TD; Keeling, MJ (2024) PLOS COMPUTATIONAL BIOLOGY 20

King, J; Lutton, J; Munn, C; Bretschneider, T; Kay, R (2024) MOLECULAR BIOLOGY OF THE CELL 35

Spiritosanto, E; Lutton, JE; Bretschneider, T; Smutny, M (2024) MOLECULAR BIOLOGY OF THE CELL 35

Vlachou, D; Veretennikova, M; Usselmann, L; Vasilyev, V; Ott, S; Bjarnason, GA; Dallmann, R; Levi, F; Rand, DA (2024) PLOS COMPUTATIONAL BIOLOGY 20

Henlon, Y; Panir, K; Mcintyre, I; Hogg, C; Dhami, P; Cuff, AO; Senior, A; Adwani, NM; Courtois, ET; Horne, AW; Rosser, M; Ott, S; Greaves, E (2024) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 121

Asplin, P; Mancy, R; Finnie, T; Cumming, F; Keeling, MJ; Hill, EM (2024) JOURNAL OF THE ROYAL SOCIETY INTERFACE 21

Osman, R; Cole, M; Dema, E; Didelot, X; Field, N; Hughes, G; Saunders, J (2024) SEXUALLY TRANSMITTED DISEASES 51 S310-S311

Moore, MP; Laager, M; Ribeca, P; Didelot, X (2024) PLOS GENETICS 20

Carson, J; Keeling, M; Wyllie, D; Ribeca, P; Didelot, X (2024) MOLECULAR BIOLOGY AND EVOLUTION 41

Rawlings, NN; Bailey, M; Craig, P; Courtenay, O (2024) PARASITE EPIDEMIOLOGY AND CONTROL 27

Eigentler, L; Sensi, M (2024) JOURNAL OF THEORETICAL BIOLOGY 595

Althobaity, YM; Alkhudaydi, MH; Hill, EM; Thompson, RN; Tildesley, MJ (2024) ROYAL SOCIETY OPEN SCIENCE 11

Medina-Aguayo, FJ; Didelot, X; Everitt, R (2024) BAYESIAN ANALYSIS 19 1245-1275

Bouros, I; Hill, EM; Keeling, MJ; Moore, S; Thompson, RN (2024) PLOS COMPUTATIONAL BIOLOGY 20

Yang, J; Latuszynski, K; Roberts, GO (2024) ANNALS OF STATISTICS 52 2692-2713

Offord, E; Lutton, J; Bretschneider, T (2024) IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI 2024

Burroughs, NJ; Leuridan, MLC (2024) IET CONTROL THEORY AND APPLICATIONS 18 1621-1637

Tzamarias, BDE; Ballesta, A; Burroughs, NJ (2024) MATHEMATICS 12

Doyle, NJ; Cumming, F; Thompson, RN; Tildesley, MJ (2024) PLOS COMPUTATIONAL BIOLOGY 20

Nair, S; Barker, CR; Bird, M; Greig, DR; Collins, C; Painset, A; Chattaway, M; Pickard, D; Larkin, L; Gharbia, S; Didelot, X; Ribeca, P (2024) MICROBIAL GENOMICS 10

Moro, S; Spencer, SEF; Lester, DW; Nübling, F; Sommer, M; Costantini, G (2024) ACS NANO 18 11655-11664

Keeling, MJ; Dyson, L (2024) PLOS COMPUTATIONAL BIOLOGY 20

Cartes, JA; Bonizzoni, P; Ciccolella, S; Della Vedova, G; Denti, L; Didelot, X; Monti, DC; Pirola, Y (2024) BIOINFORMATICS 40

Gonçalves, FB; Latuszynski, KG; Roberts, GO (2024) JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION 119 1882-1894

Kaye, AR; Obolski, U; Sun, LT; Hart, WS; Hurrell, JW; Tildesley, MJ; Thompson, RN (2024) LANCET PLANETARY HEALTH 8 e1079-e1087

Fairbanks, EL; Daly, JM; Tildesley, MJ (2024) VIRUSES-BASEL 16

Vasconcelos, A et al. (2024) CLINICAL INFECTIOUS DISEASES 78 S83-S92

Reinhold, K; Eigentler, L; Kikuchi, DW (2024) JOURNAL OF EVOLUTIONARY BIOLOGY 37 538-547

Roberts, GO; Rosenthal, JS (2024) CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE 52 659-677

Lambisia, AW; Murunga, N; Mutunga, M; Cheruiyot, R; Maina, G; Makori, TO; Nokes, DJ; Agoti, CN (2024) GUT PATHOGENS 16

Osman, R; Dema, E; David, A; Hughes, G; Field, N; Cole, M; Didelot, X; Saunders, J (2024) JOURNAL OF INFECTION 88

Contina, JB; Seibel, RL; Chaulagain, B; Mills, KB; Tildesley, MJ; Mundt, CC (2024) ECOSPHERE 15

Rosazza, T; Earl, C; Eigentler, L; Davidson, FA; Stanley-Wall, NR (2024) MOLECULAR MICROBIOLOGY 122 184-200

Kay, RR; Lutton, JE; King, JS; Bretschneider, T (2024) BIOCHEMICAL SOCIETY TRANSACTIONS 52 1785-1794

Courson, J; Quoy, M; Timofeeva, Y; Manos, T (2024) FRONTIERS IN COMPUTATIONAL NEUROSCIENCE 18

Owuor, DC; Ngoi, JM; Nyasimi, FM; Murunga, N; Nyiro, JU; Chaves, SS; Nokes, DJ; Agoti, CN (2024) SCIENTIFIC REPORTS 14

Ogi-Gittins, I; Hart, WS; Song, J; Nash, RK; Polonsky, J; Cori, A; Hill, EM; Thompson, RN (2024) EPIDEMICS 47

Kendall, M; Ferretti, L; Wymant, C; Tsallis, D; Petrie, J; Di Francia, A; Di Lauro, F; Abeler-Dörner, L; Manley, H; Panovska-Griffiths, J; Ledda, A; Didelot, X; Fraser, C (2024) SCIENCE 385

Fotopoulou, ET; Jenkins, C; Barker, CR; Painset, A; Didelot, X; Simbo, A; Douglas, A; Godbole, G; Jorgensen, F; Gharbia, S; McLauchlin, J (2024) MICROBIAL GENOMICS 10

Owuor, DC; de Laurent, ZR; Oketch, JW; Murunga, N; Otieno, JR; Nabakooza, G; Chaves, SS; Nokes, DJ; Agoti, CN (2024) SCIENTIFIC REPORTS 14

MacDonald, JC; Gulbudak, H; Beechler, B; Gorsich, EE; Gubbins, S; Pérez-Martin, E; Jolles, AE (2024) AMERICAN NATURALIST 204 133-146

Fielder, H; Beale, T; Jeger, MJ; Oliver, G; Parnell, S; Szyniszewska, AM; Taylor, P; Cunniffe, NJ (2024) PHYTOPATHOLOGY 114 1717-1732

Li, H et al. (2024) NATURE FOOD 5

Nyiro, JU et al. (2024) BMC PUBLIC HEALTH 24

2023

Guzmán-Rincón, LM; Hill, EM; Dyson, L; Tildesley, MJ; Keeling, MJ (2023) JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS 72 1413-1434

Cavallaro, M; Dyson, L; Tildesley, MJ; Todkill, D; Keeling, MJ (2023) JOURNAL OF THE ROYAL SOCIETY INTERFACE 20 20230410

Keeling, MJ; Moore, S; Penman, BS; Hill, EM (2023) NATURE COMMUNICATIONS 14 740

Helekal, D; Keeling, M; Grad, YH; Didelot, X (2023) JOURNAL OF THE ROYAL SOCIETY INTERFACE 20 20230074

McKendrick, JQ; Tennant, WSD; Tildesley, MJ (2023) PLOS NEGLECTED TROPICAL DISEASES 17 e0011543

Gowers, RP; Richardson, MJE (2023) PHYSICAL REVIEW RESEARCH 5 23095

Tomás, RMF; Dallman, R; Congdon, TR; Gibson, MI (2023) BIOMATERIALS SCIENCE 11 7639-7654

Lagunas, B; Richards, L; Sergaki, C; Burgess, J; Pardal, AJ; Hussain, RMF; Richmond, BL; Baxter, L; Roy, P; Pakidi, A; Stovold, G; Vázquez, S; Ott, S; Schäfer, P; Gifford, ML (2023) MICROBIOME 11 146

Hill, EM; Prosser, NS; Brown, PE; Ferguson, E; Green, MJ; Kaler, J; Keeling, MJ; Tildesley, MJ (2023) PREVENTIVE VETERINARY MEDICINE 219 106019

Vasdekis, G; Roberts, GO (2023) ANNALS OF APPLIED PROBABILITY 33 4693-4746

Lovell-Read, FA; Parnell, S; Cunniffe, NJ; Thompson, RN (2023) PLOS COMPUTATIONAL BIOLOGY 19 e1010884

Huang, CI; Crump, RE; Crowley, EH; Hope, A; Bessell, PR; Shampa, C; Miaka, EM; Rock, KS (2023) PLOS NEGLECTED TROPICAL DISEASES 17 e0011299

Platt, A; Lutton, EJ; Offord, E; Bretschneider, T (2023) BIOINFORMATICS 39 btad013

Jeger, MJ; Fielder, H; Beale, T; Szyniszewska, AM; Parnell, S; Cunniffe, NJ (2023) PHYTOPATHOLOGY 113 1141-1158

Didelot, X; Helekal, D; Kendall, M; Ribeca, P (2023) BIOINFORMATICS 39

Vrljicak, P; Lucas, ES; Tryfonos, M; Muter, J; Ott, S; Brosens, JJ (2023) CELL REPORTS 42 113525

Brand, SPC; Cavallaro, M; Cumming, F; Turner, C; Florence, I; Blomquist, P; Hilton, J; Guzman-Rincon, LM; House, T; Nokes, DJ; Keeling, MJ (2023) NATURE COMMUNICATIONS 14

Althobaity, Y; Tildesley, MJ (2023) SCIENTIFIC REPORTS 13 843

Offord, E; Lutton, JE; Bretschneider, T (2023) 2023 IEEE 20TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI

Hill, EM (2023) JOURNAL OF THEORETICAL BIOLOGY 557 111331

Marinho, JF Jr; Monteiro, JFCLS; de Carvalho, AWS; de Carvalho, FG; Cavalcanti, MD; Shaw, J; Courtenay, O; Brandao, SP (2023) PLOS NEGLECTED TROPICAL DISEASES 17 e0010996

Courtenay, O; Marinho, JF Jr; Brito, MEF; Monteiro, JFCLS; Shaw, JJ; Brandao, SP (2023) PATHOGENS 12 1395

Jenkins, PA; Pollock, M; Roberts, GO (2023) METHODOLOGY AND COMPUTING IN APPLIED PROBABILITY 25 83

Corbella, A; Presanis, AM; Birrell, PJ; De Angelis, D (2023) JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY 186

Rysava, K; Tildesley, MJ (2023) PLOS COMPUTATIONAL BIOLOGY 19 e1011187

Lutton, JE; Coker, HLE; Paschke, P; Munn, CJ; King, JS; Bretschneider, T; Kay, RR (2023) CURRENT BIOLOGY 33 3083

Beck-Johnson, LM; Gorsich, EE; Hallman, C; Tildesley, MJ; Miller, RS; Webb, CT (2023) EPIDEMICS 42 100668

Keeling, MJ (2023) JOURNAL OF THEORETICAL BIOLOGY 556 111299

van den Bosch, F; McRoberts, N; Bourhis, Y; Parnell, S; Hassall, KL (2023) JOURNAL OF THEORETICAL BIOLOGY 560 111385

Reid, D et al. (2023) SEXUALLY TRANSMITTED INFECTIONS 99 A99-A100

Didelot, X; Franceschi, V; Frost, SDW; Dennis, A; Volz, EM (2023) VIRUS EVOLUTION 9 vead028

Mahony, CB; Copper, L; Vrljicak, P; Noyvert, B; Constantinidou, C; Browne, S; Pan, Y; Palles, C; Ott, S; Higgs, MR; Monteiro, R (2023) CELL REPORTS 42 112571

Kaba, D et al. (2023) PLOS NEGLECTED TROPICAL DISEASES 17 e0011514

Antillon, M et al. (2023) PLOS NEGLECTED TROPICAL DISEASES 17 e0011396

Gomez, LRE; Savin, C; Andrianaivoarimanana, V; Rahajandraibe, S; Randriantseheno, LN; Zhou, ZM; Kocher, A; Didelot, X; Rajerison, M; Kühnert, D (2023) PLOS NEGLECTED TROPICAL DISEASES 17 e0010362

Gonçalves, FB; Latuszynski, KG; Roberts, GO (2023) JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Agrawal, S; Vats, D; Latuszynski, K; Roberts, GO (2023) ADVANCES IN APPLIED PROBABILITY 55 492-509

Davis, EL; Crump, RE; Medley, GF; Solomon, AW; Pemmaraju, VRR; Hollingsworth, TD (2023) PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 378 20220408

Chase-Topping, M et al. (2023) MICROBIAL GENOMICS 9 1090

Gallagher, KE et al. (2023) INFLUENZA AND OTHER RESPIRATORY VIRUSES 17 e13185

Norman, CA; Krishnakumar, SS; Timofeeva, Y; Volynski, KE (2023) COMMUNICATIONS BIOLOGY 6 1091

Roberts, GO; Rosenthal, JS (2024) CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE 52 659-677

Roberts, GO; Rosenthal, JS (2023) METHODOLOGY AND COMPUTING IN APPLIED PROBABILITY 25 6

Kendall, M; Tsallis, D; Wymant, C; Di Francia, A; Balogun, Y; Didelot, X; Ferretti, L; Fraser, C (2023) NATURE COMMUNICATIONS 14 858

Gonçalves, FB; Latuszynski, K; Roberts, GO (2023) JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY 85 732-756

Nyagwange, J et al. (2023) INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES 127 11-16

Mwanga, MJ et al. (2023) EMERGING INFECTIOUS DISEASES 29 2376-2379

Owuor, DC; de Laurent, ZR; Nyawanda, BO; Emukule, GO; Kondor, R; Barnes, JR; Nokes, DJ; Agoti, CN; Chaves, SS (2023) SCIENTIFIC REPORTS 13 22342

Lambisia, AW; Makori, TO; Mutunga, M; Cheruiyot, R; Murunga, N; Quick, J; Githinji, G; Nokes, DJ; Houldcroft, CJ; Agoti, CN (2023) VIRUS EVOLUTION 9 vead023

Rushmore, J; Beechler, BR; Tavalire, H; Gorsich, EE; Charleston, B; Devan-Song, A; Glidden, CK; Jolles, AE (2023) ECOLOGY AND EVOLUTION 13 e10447

Eames, KTD; Tang, ML; Hill, EM; Tildesley, MJ; Read, JM; Keeling, MJ; Gog, JR (2023) EPIDEMICS 42 100659

Chan, YLE; Irvine, MA; Prystajecky, N; Sbihi, H; Taylor, M; Joffres, Y; Schertzer, A; Rose, C; Dyson, L; Hill, EM; Tildesley, M; Tyson, JR; Hoang, LMN; Galanis, E (2023) EMERGING INFECTIOUS DISEASES 29 1999-2007

Dingle, KE; Freeman, J; Didelot, X; Quan, TP; Eyre, DW; Swann, J; Spittal, WD; Clark, EV; Jolley, KA; Walker, AS; Wilcox, MH; Crook, DW (2023) MBIO 14

Yenew, B et al. (2023) NATURE COMMUNICATIONS 14 7519

Shaw, JJ; Marinho, JF Jr; Courtenay, O; Brandao, SP (2023) REVISTA DA SOCIEDADE BRASILEIRA DE MEDICINA TROPICAL 56 e05032023

Dai, HS; Pollock, M; Roberts, GO (2023) JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY 85 84-107

Ward, DG; Baxter, L; Ott, S; Gordon, NS; Wang, JH; Patel, P; Piechocki, K; Silcock, L; Sale, C; Zeegers, MP; Cheng, K; James, ND; Bryan, RT (2023) EUROPEAN UROLOGY ONCOLOGY 6 67-75

Mughal, SR; Niazi, SA; Do, T; Gilbert, SC; Didelot, X; Radford, DR; Beighton, D (2023) MICROORGANISMS 11 254

Baxter, L et al. (2023) SCIENTIFIC REPORTS 13 1060

Ortiz, AT; Kendall, M; Storey, N; Hatcher, J; Dunn, H; Roy, S; Williams, R; Williams, C; Goldstein, RA; Didelot, X; Harris, K; Breuer, J; Grandjean, L (2023) ELIFE 12 e84384

Jibreel, T et al. (2023) MEDICAL AND VETERINARY ENTOMOLOGY 37 782-792

Guarido, MM; Fourie, I; Meno, K; Mendes, A; Riddin, MA; MacIntyre, C; Manyana, S; Johnson, T; Schrama, M; Gorsich, EE; Brooke, BD; Almeida, APG; Venter, M (2023) VIRUSES-BASEL 15 414

Makori, TO; Bargul, JL; Lambisia, AW; Mwanga, MJ; Murunga, N; de Laurent, ZR; Lewa, CS; Mutunga, M; Kellam, P; Cotten, M; Nokes, DJ; Phan, M; Agoti, CN (2023) VIRUS EVOLUTION 9 vead025

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2021

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2020

Atkins, BD; Jewell, CP; Runge, MC; Ferrari, MJ; Shea, K; Probert, WJM; Tildesley, MJ (2020) JOURNAL OF THEORETICAL BIOLOGY 506 110380

Kamau, E; Otieno, JR; Lewa, CS; Mwema, A; Murunga, N; Nokes, DJ; Agoti, CN (2020) SCIENTIFIC REPORTS 10 21176

Touloupou, P; Finkenstadt, B; Besser, TE; French, NP; Spencer, SEF (2020) ANNALS OF APPLIED STATISTICS 14 1925-1944

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Hockham, C; Bhatt, S; Colah, R; Mukherjee, MB; Penman, BS; Gupta, S; Piel, FB (2018) SCIENTIFIC REPORTS 8 17685

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Chalker, VJ; Smith, A; Al-Shahib, A; Botchway, S; Macdonald, E; Daniel, R; Phillips, S; Platt, S; Doumith, M; Tewolde, R; Coelho, J; Jolley, KA; Underwood, A; McCarthy, ND (2016) EMERGING INFECTIOUS DISEASES 22 973-980

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Kiti, MC; Kinyanjui, TM; Koech, DC; Munywoki, PK; Medley, GF; Nokes, DJ (2014) PLOS ONE 9 e104786

Tyson, RA; Zatulovskiy, E; Kay, RR; Bretschneider, T (2014) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 111 11703-11708

Cabeza, JZ; Cauchy, P; James, S; Piper, J; Ptasinska, A; Imperato, MR; Canestraro, M; Assi, S; Hoogenkamp, M; Westhead, D; Ott, S; Bonifer, C; Cockerill, P (2014) EXPERIMENTAL HEMATOLOGY 42 S67-S67

Brooks-Pollock, E; Roberts, GO; Keeling, MJ (2014) NATURE 511 228

Feillet, C; Krusche, P; Tamanini, F; Janssens, RC; Downey, MJ; Martin, P; Teboul, M; Saito, S; Levi, FA; Bretschneider, T; van der Horst, GTJ; Delaunay, F; Rand, DA (2014) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 111 9828-9833

Papanayotou, C; Benhaddou, A; Camus, A; Perea-Gomez, A; Jouneau, A; Mezger, V; Langa, F; Ott, S; Saberan-Djoneidi, D; Collignon, J (2014) PLOS BIOLOGY 12 e1001890

Munywoki, PK; Koech, DC; Agoti, CN; Lewa, C; Cane, PA; Medley, GF; Nokes, DJ (2014) JOURNAL OF INFECTIOUS DISEASES 209 1685-1692

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Polanski, K; Rhodes, J; Hill, C; Zhang, PJ; Jenkins, DJ; Kiddle, SJ; Jironkin, A; Beynon, J; Buchanan-Wollaston, V; Ott, S; Denby, KJ (2014) BIOINFORMATICS 30 962-970

Buhnerkempe, MG; Tildesley, MJ; Lindstrom, T; Grear, DA; Portacci, K; Miller, RS; Lombard, JE; Werkman, M; Keeling, MJ; Wennergren, U; Webb, CT (2014) PLOS ONE 9 e91724

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Ott, S; Hebenstreit, D (2014) NATURE 506 295-295

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Rock, K; Brand, S; Moir, J; Keeling, MJ (2014) REPORTS ON PROGRESS IN PHYSICS 77 26602

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2013

Finkenstadt, B; Woodcock, DJ; Komorowski, M; Harper, CV; Davis, JRE; White, MRH; Rand, DA (2013) ANNALS OF APPLIED STATISTICS 7 1960-1982

Robery, S; Tyson, R; Dinh, C; Kuspa, A; Noegel, AA; Bretschneider, T; Andrews, PLR; Williams, RSB (2013) JOURNAL OF CELL SCIENCE 126 5465-5476

Datta, S; Bull, JC; Budge, GE; Keeling, MJ (2013) JOURNAL OF THE ROYAL SOCIETY INTERFACE 10 20130650

Agoti, CN; Gitahi, CW; Medley, GF; Cane, PA; Nokes, DJ (2013) INFLUENZA AND OTHER RESPIRATORY VIRUSES 7 1008-1012

Sande, CJ; Mutunga, MN; Okiro, EA; Medley, GF; Cane, PA; Nokes, DJ (2013) JOURNAL OF MEDICAL VIROLOGY 85 2020-2025

Piper, J; Elze, MC; Cauchy, P; Cockerill, PN; Bonifer, C; Ott, S (2013) NUCLEIC ACIDS RESEARCH 41 e201

Sirinukunwattana, K; Savage, RS; Bari, MF; Snead, DRJ; Rajpoot, NM (2013) PLOS ONE 8 e75748

Panousopoulou, E; Tyson, RA; Bretschneider, T; Green, JBA (2013) DEVELOPMENTAL BIOLOGY 382 496-503

Flood, JS; Porphyre, T; Tildesley, MJ; Woolhouse, MEJ (2013) BMC VETERINARY RESEARCH 9 198

Porphyre, T; Auty, HK; Tildesley, MJ; Gunn, GJ; Woolhouse, MEJ (2013) PLOS ONE 8 e77616

Du, CJ; Hawkins, PT; Stephens, LR; Bretschneider, T (2013) BMC BIOINFORMATICS 14 296

Costa, MJ; Finkenstadt, B; Roche, V; Levi, F; Gould, PD; Foreman, J; Halliday, K; Hall, A; Rand, DA (2013) BIOSTATISTICS 14 792-806

Danon, L; Read, JM; House, TA; Vernon, MC; Keeling, MJ (2013) PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 280 20131037

Bechtold, U et al. (2013) JOURNAL OF EXPERIMENTAL BOTANY 64 3467-3481

Pontiroli, A; Khera, TT; Oakley, BB; Mason, S; Dowd, SE; Travis, ER; Erenso, G; Aseffa, A; Courtenay, O; Wellington, EMH (2013) PLOS ONE 8 e68648

Kerr, MI; Wall, MJ; Richardson, MJE (2013) JOURNAL OF PHYSIOLOGY-LONDON 591 3371-3380

Brown, P; Baxter, L; Hickman, R; Beynon, J; Moore, JD; Ott, S (2013) BIOINFORMATICS 29 1696-1697

Hickman, R; Hill, C; Penfold, CA; Breeze, E; Bowden, L; Moore, JD; Zhang, PJ; Jackson, A; Cooke, E; Bewicke-Copley, F; Mead, A; Beynon, J; Wild, DL; Denby, KJ; Ott, S; Buchanan-Wollaston, V (2013) PLANT JOURNAL 75 26-39

Woodcock, DJ; Vance, KW; Komorowski, M; Koentges, G; Finkenstadt, B; Rand, DA (2013) BIOINFORMATICS 29 1519-1525

Webb, SD; Keeling, MJ; Boots, M (2013) JOURNAL OF THEORETICAL BIOLOGY 324 21-31

Jenkins, DJ; Finkenstadt, B; Rand, DA (2013) BIOINFORMATICS 29 1158-1165

Laranjeiro, R; Tamai, TK; Peyric, E; Krusche, P; Ott, S; Whitmore, D (2013) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 6835-6840

Anderson, LJ; Dormitzer, PR; Nokes, DJ; Rappuoli, R; Roca, A; Graham, BS (2013) VACCINE 31 B209-B215

Loebel, A; Le Be, JV; Richardson, MJE; Markram, H; Herz, AVM (2013) JOURNAL OF NEUROSCIENCE 33 6257-6266

Black, AJ; House, T; Keeling, MJ; Ross, JV (2013) JOURNAL OF THE ROYAL SOCIETY INTERFACE 10 20121019

Darkins, R; Cooke, EJ; Ghahramani, Z; Kirk, PDW; Wild, DL; Savage, RS (2013) PLOS ONE 8 e59795

Bond, M; Croft, W; Tyson, R; Bretschneider, T; Davey, J; Ladds, G (2013) YEAST 30 145-156

Gould, PD; Ugarte, N; Domijan, M; Costa, M; Foreman, J; MacGregor, D; Rose, K; Griffiths, J; Millar, AJ; Finkenstadt, B; Penfield, S; Rand, DA; Halliday, KJ; Hall, AJW (2013) MOLECULAR SYSTEMS BIOLOGY 9 650

Webb, SD; Keeling, MJ; Boots, M (2013) THEORETICAL POPULATION BIOLOGY 84 36-45

Fuller, JA et al. (2013) PLOS ONE 8 e56882

Sande, CJ; Mutunga, MN; Medley, GF; Cane, PA; Nokes, DJ (2013) JOURNAL OF INFECTIOUS DISEASES 207 489-492

Munywoki, PK; Ohuma, EO; Ngama, M; Bauni, E; Scott, JAG; Nokes, DJ (2013) EMERGING INFECTIOUS DISEASES 19 223-229

Quinnell, RJ; Carson, C; Reithinger, R; Garcez, LM; Courtenay, O (2013) PLOS NEGLECTED TROPICAL DISEASES 7 e1992

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2012

Okiro, EA; Ngama, M; Bett, A; Nokes, DJ (2012) PLOS ONE 7 e52520

Onyango, CO; Njeru, R; Kazungu, S; Achilla, R; Bulimo, W; Welch, SR; Cane, PA; Gunson, RN; Hammitt, LL; Scott, JAG; Berkley, JA; Nokes, DJ (2012) JOURNAL OF INFECTIOUS DISEASES 206 S61-S67

Kirk, P; Griffin, JE; Savage, RS; Ghahramani, Z; Wild, DL (2012) BIOINFORMATICS 28 3290-3297

Agoti, CN; Mwihuri, AG; Sande, CJ; Onyango, CO; Medley, GF; Cane, PA; Nokes, DJ (2012) JOURNAL OF INFECTIOUS DISEASES 206 1532-1541

Danon, L; House, TA; Read, JM; Keeling, MJ (2012) JOURNAL OF THE ROYAL SOCIETY INTERFACE 9 2826-2833

Tildesley, MJ; Ryan, SJ (2012) PLOS COMPUTATIONAL BIOLOGY 8 e1002723

Ohuma, EO; Okiro, EA; Ochola, R; Sande, CJ; Cane, PA; Medley, GF; Bottomley, C; Nokes, DJ (2012) AMERICAN JOURNAL OF EPIDEMIOLOGY 176 794-802

van Hoek, AJ; Ngama, M; Ismail, A; Chuma, J; Cheburet, S; Mutonga, D; Kamau, T; Nokes, DJ (2012) PLOS ONE 7 e47511

House, T; Inglis, N; Ross, JV; Wilson, F; Suleman, S; Edeghere, O; Smith, G; Olowokure, B; Keeling, MJ (2012) BMC MEDICINE 10 117

Baxter, L; Jironkin, A; Hickman, R; Moore, J; Barrington, C; Krusche, P; Dyer, NP; Buchanan-Wollaston, V; Tiskin, A; Beynon, J; Denby, K; Ott, S (2012) PLANT CELL 24 3949-3965

Webb, C; Ngama, M; Ngatia, A; Shebbe, M; Morpeth, S; Mwarumba, S; Bett, A; Nokes, DJ; Seale, AC; Kazungu, S; Munywoki, P; Hammitt, LL; Scott, JAG; Berkley, JA (2012) PEDIATRIC INFECTIOUS DISEASE JOURNAL 31 E152-E157

Spencer, SEF; Marshall, J; Pirie, R; Campbell, D; Baker, MG; French, NP (2012) EPIDEMIOLOGY AND INFECTION 140 1663-1677

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Xue, M; Momiji, H; Barker, G; Rand, DA; Rabbani, N; Thornalley, PJ (2012) FREE RADICAL BIOLOGY AND MEDICINE 53 S233-S233

Xue, M; Shaheen, F; Momiji, H; Barker, G; Rand, DA; Rabbani, N (2012) FREE RADICAL BIOLOGY AND MEDICINE 53 S100-S101

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Martin, JF; Santos-Beneit, F; Rodriguez-Garcia, A; Sola-Landa, A; Smith, MCM; Ellingsen, TE; Nieselt, K; Burroughs, NJ; Wellington, EMH (2012) APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 95 61-75

Iqbal, M; Mast, Y; Amin, R; Hodgson, DA; Wohlleben, W; Burroughs, NJ (2012) NUCLEIC ACIDS RESEARCH 40 5227-5239

Rock, KS; Keeling, MJ; Wood, DA (2012) ECOLOGICAL MODELLING 235 26-35

Vernon, MC; Keeling, MJ (2012) PREVENTIVE VETERINARY MEDICINE 105 110-117

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Onyango, CO; Welch, SR; Munywoki, PK; Agoti, CN; Bett, A; Ngama, M; Myers, R; Cane, PA; Nokes, DJ (2012) JOURNAL OF MEDICAL VIROLOGY 84 823-831

Tildesley, MJ; Smith, G; Keeling, MJ (2012) PREVENTIVE VETERINARY MEDICINE 104 224-239

Hammitt, LL; Kazungu, S; Morpeth, SC; Gibson, DG; Mvera, B; Brent, AJ; Mwarumba, S; Onyango, CO; Bett, A; Akech, DO; Murdoch, DR; Nokes, DJ; Scott, JAG (2012) CLINICAL INFECTIOUS DISEASES 54 S190-S199

Thomas, L; Hodgson, DA; Wentzel, A; Nieselt, K; Ellingsen, TE; Moore, J; Morrissey, ER; Legaie, R; Wohlleben, W; Rodriguez-Garcia, A; Martin, JF; Burroughs, NJ; Wellington, EMH; Smith, MCM (2012) MOLECULAR & CELLULAR PROTEOMICS 11 M111.013797

Du, CJ; Ferguson, JG; Hawkins, PT; Stephens, LR; Bretschneider, T (2012) PROCEEDINGS OF THE BRITISH MACHINE VISION CONFERENCE 2012

2011

Downey, MJ; Jeziorska, DM; Ott, S; Tamai, TK; Koentges, G; Vance, KW; Bretschneider, T (2011) PLOS ONE 6 e27886

Tsibidis, GD; Burroughs, NJ; Gaze, W; Wellington, EMH (2011) MICRON 42 911-920

Tildesley, MJ; Volkova, VV; Woolhouse, MEJ (2011) BMC VETERINARY RESEARCH 7 76

Travis, ER et al. (2011) PLOS ONE 6 e27369

Cooke, EJ; Savage, RS; Kirk, PDW; Darkins, R; Wild, DL (2011) BMC BIOINFORMATICS 12 399

Mwambi, H; Ramroop, S; White, LJ; Okiro, EA; Nokes, DJ; Shkedy, Z; Molenberghs, G (2011) STATISTICAL METHODS IN MEDICAL RESEARCH 20 551-570

Morrissey, ER; Juarez, MA; Denby, KJ; Burroughs, NJ (2011) BIOSTATISTICS 12 682-694

Yuan, YY; Savage, RS; Markowetz, F (2011) PLOS COMPUTATIONAL BIOLOGY 7 e1002227

House, T; Baguelin, M; Van Hoek, AJ; White, PJ; Sadique, Z; Eames, K; Read, JM; Hens, N; Melegaro, A; Edmunds, WJ; Keeling, MJ (2011) PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 278 2753-2760

Munywoki, PK; Hamid, F; Mutunga, M; Welch, S; Cane, P; Nokes, DJ (2011) JOURNAL OF CLINICAL MICROBIOLOGY 49 3365-3367

Burroughs, NJ; Kohler, K; Miloserdov, V; Dustin, ML; van der Merwe, PA; Davis, DM (2011) PLOS COMPUTATIONAL BIOLOGY 7 e1002076

Alijani, AK; Richardson, MJE (2011) PHYSICAL REVIEW E 84 11919

Hammitt, LL; Kazungu, S; Welch, S; Bett, A; Onyango, CO; Gunson, RN; Scott, JAG; Nokes, DJ (2011) JOURNAL OF CLINICAL MICROBIOLOGY 49 2318-2320

Nyiro, JU; Sanders, EJ; Ngetsa, C; Wale, S; Awuondo, K; Bukusi, E; Price, MA; Amornkul, PN; Nokes, DJ (2011) BMC INFECTIOUS DISEASES 11 155

Komorowski, M; Costa, MJ; Rand, DA; Stumpf, MPH (2011) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 108 8645-8650

Bryan, SJ; Burroughs, NJ; Evered, C; Sacharz, J; Nenninger, A; Mullineaux, CW; Spence, EM (2011) PLOS ONE 6 e19625

Keeling, MJ; White, PJ (2011) JOURNAL OF THE ROYAL SOCIETY INTERFACE 8 661-670

Burroughs, NJ; Ferreira, M; Oliveira, BMPM; Pinto, AA (2011) MATHEMATICAL AND COMPUTER MODELLING 53 1389-1393

Burroughs, NJ; Oliveira, BMPM; Pinto, AA; Ferreira, M (2011) MATHEMATICAL AND COMPUTER MODELLING 53 1410-1419

Harper, CV; Finkenstadt, B; Woodcock, DJ; Friedrichsen, S; Semprini, S; Ashall, L; Spiller, DG; Mullins, JJ; Rand, DA; Davis, JRE; White, MRH (2011) PLOS BIOLOGY 9 e1000607

Pontiroli, A; Travis, ER; Sweeney, FP; Porter, D; Gaze, WH; Mason, S; Hibberd, V; Holden, J; Courtenay, O; Wellington, EMH (2011) PLOS ONE 6 e17916

House, T; Keeling, MJ (2011) JOURNAL OF THEORETICAL BIOLOGY 272 1-7

Spencer, SEF; O'Neill, PD (2011) JOURNAL OF APPLIED PROBABILITY 48 173-188

Breeze, E et al. (2011) PLANT CELL 23 873-894

Levi, F; Mosekilde, E; Rand, DA (2011) INTERFACE FOCUS 1 3-6

Domijan, M; Rand, DA (2011) INTERFACE FOCUS 1 177-186

Klyuch, BP; Richardson, MJE; Dale, N; Wall, MJ (2011) JOURNAL OF PHYSIOLOGY-LONDON 589 283-295

House, T; Keeling, MJ (2011) JOURNAL OF THE ROYAL SOCIETY INTERFACE 8 67-73

Rand, DA (2011) DYNAMICS, GAMES AND SCIENCE II 2 1-24

Didelot, X; Everitt, RG; Johansen, AM; Lawson, DJ (2011) BAYESIAN ANALYSIS 6 49-76

Almeida, JP; Fisher, AM; Pinto, AA; Rand, DA (2011) DYNAMICS, GAMES AND SCIENCE I 1 11-23

Burroughs, NJ; Ferreira, M; Martins, J; Oliveira, BMPM; Pinto, AA; Stollenwerk, N (2011) DYNAMICS, GAMES AND SCIENCE I 1 183-191

Pinto, AA; Rand, DA (2011) JOURNAL OF DIFFERENCE EQUATIONS AND APPLICATIONS 17 1031-1047

Burroughs, NJ; Ferreira, M; Oliveira, BMPM; Pinto, AA (2011) JOURNAL OF DIFFERENCE EQUATIONS AND APPLICATIONS 17 1101-1106

2010

Pinto, AA; Burroughs, NJ; Ferreira, M; Oliveira, BMPM (2010) ACTA BIOTHEORETICA 58 391-404

Du, CJ; Marcello, M; Spiller, DG; White, MRH; Bretschneider, T (2010) CYTOMETRY PART A 77A 1137-1147

Kohler, K; Xiong, SQ; Brzostek, J; Mehrabi, M; Eissmann, P; Harrison, A; Cordoba, SP; Oddos, S; Miloserdov, V; Gould, K; Burroughs, NJ; van der Merwe, PA; Davis, DM (2010) PLOS ONE 5 e15374

Edwards, KD; Akman, OE; Knox, K; Lumsden, PJ; Thomson, AW; Brown, PE; Pokhilko, A; Kozma-Bognar, L; Nagy, F; Rand, DA; Millar, AJ (2010) MOLECULAR SYSTEMS BIOLOGY 6 424

Richardson, MJE; Swarbrick, R (2010) PHYSICAL REVIEW LETTERS 105 178102

Koohy, H; Dyer, NP; Reid, JE; Koentges, G; Ott, S (2010) BIOINFORMATICS 26 2391-2397

Agoti, CN; Mbisa, JL; Bett, A; Medley, GF; Nokes, DJ; Cane, PA (2010) JOURNAL OF VIROLOGY 84 10425-10428

Picot, E; Krusche, P; Tiskin, A; Carre, I; Ott, S (2010) PLANT JOURNAL 64 165-176

Nair, H; Gessner, BD; Nokes, DJ; Theodoratou, E; Rudan, I; Madhi, SA; Simoes, EAF; Campbell, H (2010) LANCET 376 872-873

Morrissey, ER; Juarez, MA; Denby, KJ; Burroughs, NJ (2010) BIOINFORMATICS 26 2305-2312

Carson, C; Quinnell, RJ; Holden, J; Garcez, LM; Deborggraeve, S; Courtenay, O (2010) JOURNAL OF CLINICAL MICROBIOLOGY 48 3325-3330

Nokes, DJ; Peenze, I; Netshifhefhe, L; Abwao, J; De Beer, MC; Seheri, M; Williams, TN; Page, N; Steele, D (2010) JOURNAL OF INFECTIOUS DISEASES 202 S180-S186

Turner, DA; Paszek, P; Woodcock, DJ; Nelson, DE; Horton, CA; Wang, YJ; Spiller, DG; Rand, DA; White, MRH; Harper, CV (2010) JOURNAL OF CELL SCIENCE 123 2834-2843

Vance, KW; Shaw, HM; Rodriguez, M; Ott, S; Goding, CR (2010) MOLECULAR BIOLOGY OF THE CELL 21 2770-2779

Rorres, C; Pelletier, STK; Keeling, MJ; Smith, G (2010) THEORETICAL POPULATION BIOLOGY 78 46-53

Morelli, G; Didelot, X; Kusecek, B; Schwarz, S; Bahlawane, C; Falush, D; Suerbaum, S; Achtman, M (2010) PLOS GENETICS 6 e1001036

Didelot, X; Maiden, MCJ (2010) TRENDS IN MICROBIOLOGY 18 315-322

Akman, OE; Rand, DA; Brown, PE; Millar, AJ (2010) BMC SYSTEMS BIOLOGY 4 88

Paszek, P; Ryan, S; Ashall, L; Sillitoe, K; Harper, CV; Spiller, DG; Rand, DA; White, MRH (2010) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 107 11644-11649

Savage, RS; Ghahramani, Z; Griffin, JE; de la Cruz, BJ; Wild, DL (2010) BIOINFORMATICS 26 i158-i167

Spiller, DG; Wood, CD; Rand, DA; White, MRH (2010) NATURE 465 736-745

Yang, J; Kohler, K; Davis, DM; Burroughs, NJ (2010) JOURNAL OF MICROSCOPY 238 240-253

Berkley, JA; Munywoki, P; Ngama, M; Kazungu, S; Abwao, J; Bett, A; Lassauniere, R; Kresfelder, T; Cane, PA; Venter, M; Scott, JAG; Nokes, DJ (2010) JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION 303 2051-2057

Keeling, MJ; Danon, L; Vernon, MC; House, TA (2010) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 107 8866-8870

Nair, H et al. (2010) LANCET 375 1545-1555

Sanchez-Romero, MA; Busby, SJW; Dyer, NP; Ott, S; Millard, AD; Grainger, DC (2010) MBIO 1 e00012-10

Ross, JV; House, T; Keeling, MJ (2010) PLOS ONE 5 e9666

House, T; Keeling, MJ (2010) PLOS COMPUTATIONAL BIOLOGY 6 e1000721

Carson, C; Quinnell, RJ; Day, MJ; Courtenay, O (2010) VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY 133 264-268

House, T; Hall, I; Danon, L; Keeling, MJ (2010) BMC INFECTIOUS DISEASES 10 25

Bern, C; Courtenay, O; Alvar, J (2010) PLOS NEGLECTED TROPICAL DISEASES 4 e599

Okiro, EA; White, LJ; Ngama, M; Cane, PA; Medley, GF; Nokes, DJ (2010) BMC INFECTIOUS DISEASES 10 15

Tildesley, MJ; House, TA; Bruhn, MC; Curry, RJ; O'Neil, M; Allpress, JLE; Smith, G; Keeling, MJ (2010) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 107 1041-1046

Reid, JE; Evans, KJ; Dyer, N; Wernisch, L; Ott, S (2010) BMC GENOMICS 11 30

Nieselt, K et al. (2010) BMC GENOMICS 11 10

Pinto, AA; Rand, DA; Ferreira, F (2010) JOURNAL OF DIFFERENCE EQUATIONS AND APPLICATIONS 16 347-371

Pinto, AA; Rand, DA (2010) JOURNAL OF DIFFERENCE EQUATIONS AND APPLICATIONS 16 945-962

Tyson, RA; Epstein, DBA; Anderson, KI; Bretschneider, T (2010) MATHEMATICAL MODELLING OF NATURAL PHENOMENA 5 34-55

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